1. Textbooks.

B.E. Juniper, G.C. Cox, A.J. Gilchrist and P.R. Williams. Techniques for Plant Electron Microscopy. Blackwell Scientific Publications, Oxford & Edinburgh, 1970. 108pp.

G.C. Cox. Optical Imaging Techniques in Cell Biology. CRC Press Boca Raton & New York, 2007 344pp; ISBN: 0-8493-3919-7 details

2. Chapters in books.

B.E. Juniper and G.C. Cox, 1972, Epidermis (plant). McGraw Hill Yearbook of Science and Technology 1971, pp 209-211.

G.C. Cox, 1993. Prochlorophyceae. In: T. Berner, ed. Ultrastructure of Microalgae. CRC Press, Boca Raton. pp 53-70

G.C. Cox, 1995. Mass storage and hard copy. In: Handbook of Biological Confocal Microscopy (2nd edition), ed. J. Pawley. Plenum Press, New York. 535-548.

G.C. Cox, 1998. Measurement in the confocal microscope. In: Confocal Microscopy, Methods and Protocols (ed. S. Paddock) . Humana Press, Totawa, NJ. pp 357-371

G.C. Cox and Colin Sheppard, 1999. Multi-photon microscopy. In: Fluorescent and Luminescent Probes, 2nd edition (ed. W. Mason), Academic Press 331-336

G.C. Cox and Colin Sheppard, 1999 Appropriate Image Processing for Confocal Microscopy. In: P.C. Cheng, P P Hwang, J L. Wu, G Wang & H Kim (eds) Focus on Multidimensional Microscopy. World Scientific Publishing, Singapore, New Jersey, London & Hong Kong. Volume 2, pp 42-54 ISBN 981-02-3992-0

Guy Cox & Eleanor Kable, 2006. Second Harmonic Imaging of Collagen. In: D.J. Taatjes and B.T. Mossman (Eds.), Cell Imaging Techniques. (Methods in Molecular Biology, Volume 319) Humana Press, Totowa, NJ, pages 15-35.

G.C. Cox, 2006. Mass storage, display and hard copy. In: Handbook of Biological Confocal Microscopy (3rd edition), ed. J. Pawley. Springer, New York. pp 580-594

Guy Cox and Anya Salih, 2006 Confocal microscopy of GFP-like pigments in corals. In: H. Yu, P.C. Cheng, PC Lin & FJ Kao (eds) Multimodal Microscopy. World Scientific Publishing, Singapore, New Jersey, London & Hong Kong. Pp 238-245 ISBN 981-256-533-7

G.C. Cox, 2006. Mass storage, display and hard copy. In: Handbook of Biological Confocal Microscopy (3rd edition), ed. J. Pawley. Springer, New York. 580-594

Guy Cox, Peter Vesk, Teresa Dibbayawan, Tobias I. Baskin & Maret Vesk, 2008. High-resolution and low-voltage SEM of plant cells. In: Biological Low-Voltage Scanning Electron Microscopy (eds. Heide Schatten & James Pawley) Springer, New York, 229-244

Guy Cox, 2008. Confocal microscopy. In: Molecular Biomethods Handbook (2nd edition), (eds JM Walker & R. Rapley). Humana Press, Totowa, NJ, pages 1009-1027.

G.C. Cox, 2010. Measurement in the confocal microscope. In: Confocal Microscopy, Methods and Protocols, 2nd edition. (ed. S. Paddock) . Humana Press, Totawa, NJ. In press

3. Papers in refereed scientific journals

G.C. Cox, 1969. Ultrathin sectioning artifacts resembling plasmodesmata. Journal of Microscopy 89, 225-227.

B.E. Juniper and G.C. Cox, 1973. The anatomy of the leaf surface: the first line of defence. Pesticide Science 4, 543-561.

G.C. Cox and B.E. Juniper, 1973. The application of stereo- micrography in the high-voltage electron microscope to studies of cell-wall structure and deposition. Journal of Microscopy 97, 29-40.

G.C. Cox and B.E. Juniper, 1973. Electron microscopy of cellulose in entire tissue. Journal of Microscopy 97, 343-355.

G.C. Cox and B.E. Juniper, 1973. Autoradiographic evidence for paramural-body function. Nature New Biology 243, 116-117.

H.B. Pollard, A. Miller and G.C. Cox, 1973. Synaptic vesicles: structure of chromaffin granule membranes. Journal of Supramolecular Structure 1, 295-306.

G.C. Cox, 1973. Caves of the Cantabrian Mountains, North-West Spain. Cave Science 51, 1-65

G.C. Cox and B.E. Juniper, 1974. Reply to Parish. Journal of Microscopy 101, 205-206.

G.C. Cox and F.E. Sanders, 1974. Ultrastructure of the host- fungus interface in a vesicular-arbuscular mycorrhiza. New Phytologist 73, 901-942.

G.C. Cox and P.B. Tinker, 1976. Translocation and transfer of nutrients in vesicular-arbuscular mycorrhizas. I. The arbuscule and phosphorus transfer: a quantitative ultrastructural study. New Phytologist 77, 371-378.

G.C. Cox, 1978. A troglophytic prokaryote of unusual ultrastructure. Biologie Cellulaire 31, 117-118.

E.J. Wright, G.C. Cox & D.M. Dwarte, 1980. Capacitation-like changes in the amoeboid sperm of a nematode. Micron 11, 377-378

T.E. Bostrom, G.C. Cox, C.E. Nockolds & A. Phillips, 1980. A simple freezing stage for the JEOL JSM U3 scanning electron microscope. Micron 11, 405-406

G.C. Cox, 1983. Engulfment of Prochloron cells by cells of the ascidian Lissoclinum. Journal of the Marine Biological Association (UK) 63, 195-198

G.C. Cox & A.W.D. Larkum, 1983. A diatom apparently living in symbiosis with a sponge. Bulletin of Marine Science 33, 943-945

P. Kott, D.L. Parry & G.C. Cox, 1984. Prokaryotic symbionts with a range of ascidian hosts. Bulletin of Marine Science 34, 308-312

G.C. Cox and B.R. Welch, 1984. Spider Cave, Jenolan - a fault-controlled system. Helictite - Journal of Australasian Cave Research 22, 43-53

G.C. Cox, 1984. Phototrophic stalagmites at Jenolan Caves, N.S.W. Helictite - Journal of Australasian Cave Research 22, 54-56

E.J. Wright, G.C. Cox & D.M. Dwarte, 1985. Membrane particle changes accompanying activation of nematode sperm. Journal of Ultrastructure Research, 90, 40-54

T.P. Dibbayawan, G.C. Cox, K.Y. Cho & D.M. Dwarte, 1985. Cell wall and plasma membrane architecture of Butyrivibrio spp. Journal of Ultrastructure Research 90, 286-293.

G. C. Cox, 1986. The origin of chloroplasts in eukaryotes. Nature 322, 412

G.C. Cox, M.L. Vesk & B.E. Juniper, 1986. High voltage electron microscopy of cytoskeletal structures in whole plant cells. Nordic Journal of Botany 6, 641-649

G.C. Cox & T.P. Dibbayawan, 1987. A chloroplast-like DNA arrangement in Synechocystis trididemni (Chroococcales, Cyanophyta). Phycologia 26, 148-151

D.M. Hunt, N.G. Mair, Guy Cox & K.Y. Cho, 1988. Microscopic observations on the structure and development normal and abnormal sporophores of Lentinus edodes. Mushroom J. Tropics, 8, 1-13

D.G. Bishop, G.C. Cox and A. Romeo, 1988. Freeze-fracture microscopy of structures involved in fusion of chloroplast liposomes by melittin. Micron and Microscopica Acta, 19, 33-40

G.C. Cox, J.M. James, K.A. Legett and R.A.L. Osborne, 1989. Stromatolitic crayfish-like stalagmites. Proc. Univ. Bristol Spelaeol. Soc. 18, 339-358.

G. C. Cox and T. P. Dibbayawan, 1993. Confocal microscopy of actin, tubulin and chloroplasts - triple labelling with a two-line laser. Journal of Computer-Assisted Microscopy 5, 17-21.

Benga, G., Poritiu D., Ghiran I., Kuchel, P. W., Gallagher C. H. and Cox, G. C., 1993. Scanning electron microscopy of red blood cells from eleven species of marsupials. Comparative Haematology International 2, 227-230.

G.C. Cox and C. Sheppard, 1993. Effects of image deconvolution on optical sectioning in conventional and confocal microscopes. Bio-Imaging 1, 82-95.

L. Emerson and G.C. Cox, 1994. Charging artefacts in atomic force microscopy. Micron 25, 267-269.

J.M. James, E. Patsalides and G.C. Cox. 1994. Amino acid composition and amino-acid racemization dating of stromatolitic stalagmites. Geomicrobiology Journal 12, 183-194.

P.C. Hill, G.R. Atkins, J. Canning, G.C. Cox and M.G. Sceats, 1995. Writing and visualization of low-threshhold type II Bragg gratings in stressed optical fibres. Applied Optics 33, 7689-7694

G.C. Cox, 1995. De virginibus puerisque - the function of the human foreskin considered from an evolutionary perspective. Medical Hypotheses, 45, 617-621.    PDF

Guy Cox, Teresa Dibbayawan & John Harper, 1997. Of plants that swim - three-dimensional architecture of the flagellar root apparatus as revealed by confocal microscopy. Cell Vision 4, 245-246

T.R. Cushway, Marco Lanzetta, Guy Cox, R. Trickett, E.T. Owen, 1997. Assessment of nerve ultrastructure by fibre-optic confocal microscopy. Microsurgery 17, 444-448

Anya Salih, Allan S. Jones, Diana Bass & Guy Cox, 1997. Confocal imaging of exine as a tool for grass pollen analysis. Grana 36, 215-224

G.C. Cox, 1999. Equipment for mass storage and processing of data. In: Confocal Microscopy (ed. P.M. Conn). Methods in Enymology 307, 29-55

A. Salih, AWD Larkum, G Cox, M Kühl and O Hoegh-Guldberg, 2000. Fluorescent pigments in corals are photoprotective. Nature 408, 850-853    PDF

Frank Manconi, Guy Cox, Eleanor Kable, Robert Markham & Ian. S. Fraser 2001. Computer-generated three-dimensional reconstruction of uterine histological parallel serial sections displaying microvascular and glandular structures in human endometrium. Micron 32, 449-453.    PDF

Jose A Feijo & Guy Cox, 2001. Visualisation of meiotic events in living anthers by means of two-photon microscopy. Micron 32, 679-684    PDF

Dedov, B. Roufogalis & G.C. Cox, 2001. Visualisation of mitochondria in living neurons with single and two-photon fluorescence laser microscopy. Micron 32, 653-660    PDF

G.C. Cox and C.J.R. Sheppard, 2001. Measurement of thin coatings in the confocal microscope. Micron 32, 701-705.    PDF

A. Argyros, S. Manos, M.C.J. Large, D.R. McKenzie, G.C. Cox and D.M. Dwarte, 2002. Electron tomography and computer visualisation of a 3-dimensional "photonic" crystal in a butterfly wing-scale Micron 33, 483-487   PDF

Guy Cox, Eleanor Kable, Allan Jones, Ian Fraser, Frank Manconi and Mark D. Gorrell. 2003. 3-dimensional imaging of collagen using second harmonic generation. Journal of Structural Biology, 141, 53-62    PDF

F. Manconi, E. Kable, G. Cox, R. Markham, I.S. Fraser, 2003 Whole-mount sections displaying microvascular and glandular structures in human uterus using multiphoton excitation microscopy. Micron 34, 351-358    PDF

G.H. Benga, B.E. Chapman, G.C. Cox , P.W. Kuchel, 2003. Comparative NMR studies of diffusional water permeability of red blood cells from different species: XIV. Little Penguin, Eudyptula minor. Cell Biology International 27, 921-928    PDF

Gorrell MD, Wang XM, Levy MT, Kable E, Marinos G, Cox G, McCaughan GW. 2003. Intrahepatic expression of collagen and fibroblast activation protein (FAP) in hepatitis C virus infection. Advances in Experimental Medicine and Biology 524, 235-243.    PDF

Guy Cox & Colin Sheppard, 2004. Practical limits of resolution in confocal and non-linear microscopy. Microscopy Research & Technique, 63, 18-22    PDF

Nuno Moreno, Jose Feijo & Guy Cox, 2004. Implementation and evaluation of a detector for forward propagated second harmonic signals. Micron, 35, 721-724    PDF

Honglin An, Simon Fleming and Guy Cox, 2004. Visualization of second-order nonlinear layer in thermally poled fused silica glass. Applied Physics, 85, 5819-5821    PDF

Guy Cox, Nuno Moreno & José Feijó, 2004. Second harmonic imaging of plant polysaccharides. Journal of Biomedical Optics 10, 024013_1-6.

Maitreyee Roy, Guy Cox and Parameswaran Hariharan, 2005. Low-coherence interference microscopy with an improved switchable achromatic phase-shifter. Optics Express 13, 9125-9130   PDF

Maitreyee Roy, Colin J. R. Sheppard, Guy Cox, and Parameswaran Hariharan, 2006. White-light interference microscopy: a way to obtain high lateral resolution over an extended range of heights. Optics Express 14, 6788-6793

Guy Cox, Mikhail Matz and Anya Salih, 2007. Fluorescence lifetime imaging of coral fluorescent proteins. Microscopy Research & Technique 70, 243-251

P. Xu, X. Wen, Z. Zheng, G. Cox, H. Zhu, 2007. Two-photon optical characteristics of zinc oxide in bulk, low dimensional and nanoforms. Journal of Luminescence 126, 641–643

4. Papers in refereed conference & symposium volumes

G.C. Cox, 1976. Microorganisms on cave walls in the deep twilight zone. Proc. 11th. Aust. Speleo. Fed. Conference, Canberra, 1976. pp 54-57.

G.C. Cox, 1977. A 'living fossil' in the twilight zone: a cave- wall bacterium of unique ultrastructure. Proc. 7th. Int. Speleo. Congress, Sheffield, UK, 1977. pp 129-131.

G.C. Cox and H.J. Marchant, 1977. Photosynthesis in the twilight zone: microorganisms with extreme structural adaptations to low light. Proc. 7th. Int. Speleo. Congress, Sheffield, UK, 1977. pp 131-133.

A.W.D. Larkum, G.C. Cox and T.P. Dibbayawan, 1989. Prokaryotic algal symbionts of coral reef sponges. Proceedings of the 6th International Coral Reef Symposium 3, 163-169.

G.C. Cox, 1989. Computer-aided instruction in electron microscopy. Inst. Phys. Conf. Ser. 98, 523-526.

G.C. Cox and D.M. Dwarte, 1989. A simple approach to colour image analysis of histological and geological specimens. Inst. Phys. Conf. Ser. 98, 577-580.

G.C. Cox, 1990. Thylakoid organization of Prochloron and its relevance to the evolution of the chloroplast. Endocytobiology IV, 553-556.

D.A. Orlovich, A.E. Ashford, G.C. Cox and A.E.P. Moore, 1990. Freeze-substitution and X-ray microanalysis of polyphosphate granules in the mycorrhizal fungus Pisolithus tinctorius (Pers.) Coker & Couch. Endocytobiology IV, 139-144.

G.C. Cox and C.J.R. Sheppard, 1995. Appropriate image processing for confocal microscopy. Zoological Studies 34, Supplement 1, 84-86

G.C. Cox, A. Salih, J.M. James and W.G. Allaway, 1995. Confocal microscopy of cyanobacteria in calcite speleothems. Zoological Studies 34, Supplement 1, 5-6

A. Salih, G.C. Cox & R. Hinde, 1995. Autofluorescence imaging of symbiotic algae in corals using confocal microscopy - a potential tool for environmental monitoring. Zoological Studies 34, Supplement 1, 53-55

T. Dibbayawan and G. Cox, 1998. Flagellar root apparatus of Chlamydomonas: an immunocytochemical study using confocal microscopy and FESEM. Electron Microscopy 1998, Vol IV, 729-730

A. Salih, O. Hoegh-Guldberg & G. Cox, 1998. Photoprotection of symbiotic dinoflagellates by fluorescent pigments in reef corals. Proc. Aust. Coral Reef Society 75 Anniv. Conf, Heron Is., Oct 1997, ed Greenwood & Hall. pp 217-230

A. Salih, O. Hoegh-Guldberg & G. Cox, 1998. Bleaching responses of coral symbiotic dinoflagellates: the effects of light and elevated temperature on their morphology and physiology. Proc. Aust. Coral Reef Society 75 Anniv. Conf, Heron Is., Oct 1997, ed Greenwood & Hall. pp

Guy Cox, Teresa Dibbayawan and Jose Feijo, 2001. Multiphoton microscopy of cell division in plant cells. SPIE Proceedings Vol. 4262, 146-154

Guy Cox, Frank Manconi and Eleanor Kable, 2002. Second harmonic imaging of collagen in mammalian tissue. SPIE Proceedings 4620, 148-156   

Guy Cox, Eleanor Kable, CJR Sheppard and Paul Xu, 2002. Resolution of second harmonic generation microscopy. Proceedings 15th International Congress on Electron Microscopy, Durban. Vol 3, 331-332

A. Argyros, S. Manos, M.C.J. Large, D.R. McKenzie, G.C. Cox and D.M. Dwarte, 2002. E.M. tomography of a natural photonic crystal. Proceedings 15th International Congress on Electron Microscopy, Durban. Vol 2, 379-380

Guy Cox, Paul Xu, Colin Sheppard & John Ramshaw, 2003. Characterization of the Second Harmonic Signal from Collagen. SPIE Proceedings 4963, 32-40    PDF

Anya Salih, Guy Cox and Anthony W. Larkum, 2003. Cellular organization & spectral diversity of GFP-like proteins in live coral cells studied by single & multi-photon imaging & microspectroscopy. SPIE Proceedings 4963, 194-200

Guy Cox, & José Feijó, 2004. Second harmonic imaging of plant polysaccharides. Proc. SPIE 5323, 335-342    PDF

Paul Xu, Guy Cox, John AM Ramshaw, Philip Lukins and Colin Sheppard, 2004. Polarization effects in SHG of collagen. Proc. SPIE 5323, 343-352

Anya Salih, Anthony Larkum, Thomas Cronin, Joerg Wiedenmann, Ron Szymczak nd Guy Cox, 2004 Biological properties of coral GFP-type proteins provide clues for engineering novel optical probes and biosensors. Proc. SPIE 5329, 61-73

Guy Cox & Anya Salih 2005. Fluorescence lifetime imaging of symbionts and fluorescent proteins in reef corals. Proc. SPIE 5700, 162-170

Maruth Banavar, Eleanor.P.W. Kable, Filip Braet, X.M.Wang, M. D. Gorrell and Guy Cox, 2006. Detection of collagen by second harmonic microscopy as a diagnostic tool for liver fibrosis. Proc SPIE 6089, 60891B 1-8

Anya Salih, Joerg Wiedenmann, Mikhail Matz, Anthony W. Larkum, Guy Cox 2006. Photoinduced activation of GFP-like proteins in tissues of reef corals. Proc SPIE 6098

Anya Salih, Jörg Wiedenmann & Guy Cox, 2007. EosFP - a multi-state photoconvertible protein from the coral Lobophyllia hemprichii Proc SPIE 6442, 64428-1 – 64428-8

5. Popular books

Pannipa Dibbayawan and Guy Cox, 1988 The Thai Cookbook. Angus and Robertson, Sydney, Auckland and London. 97pp ISBN 15700 6

5. General articles & letters

Guy Cox, 1968. Cave Filming in Spain, The Speleologist 2 (15) 14-16

Guy Cox and others, 1971. Caves of the Western Sierra de Cuera. Trans. Cave Research Group of GB, 13 (1) 1-35

G.C. Cox, 1980 Botany, In: Caves and Karst of the Muller Range (ed J.M. James and H.J. Dyson), pp 118-119 ISBN 0867 58042 9

Guy Cox, 1984. Why do biologists use the HVEM? Aust. EM Newsletter 3, 4-7

Guy Cox, 1985 The 10 deepest caves in Australia Australian Almanac, 90

Guy Cox, 1985 The world's longest cave dive. Australian Almanac, 140-141

Guy Cox, 1985 Longest and deepest caves in the southern hemisphere. Australian Almanac, 141-142

Guy Cox, 1985. A much travelled thick section. Aust. EM Newsletter 5, 22-23

Guy Cox, 1986 Commercial show caves of Australia. Second Australian Almanac, 493-499

Guy Cox, 1986. A tale of two sections and three cities. Aust. EM Newsletter 9, 12-14

Guy Cox, 1986. The scanning tunneling microscope. Aust. EM Newsletter 10, 8-9

Guy Cox, 1986. Stereo pairs from thick sections. Aust. EM Newsletter 12, 6-8

Guy Cox, 1987. Australia's unique flora. Australian Almanac 1988, 320-328

Guy Cox, 1987. What went wrong with my micrograph? Aust. EM Newsletter 16, 12-13

Guy Cox, 1988. Computerised microscopes - the way ahead? Aust. EM Newsletter 17, 11-13

Guy Cox, 1988. Confocal scanning optical microscopes. Aust. EM Newsletter 20, 3-7

Guy Cox, 1993. 3D reconstruction software. Aust. EM Newsletter 37, 25-32

Guy Cox, 1993. Photons under the microscope - Marvin Minsky, the forgotten pioneer?. Aust. EM Newsletter 38, 4-6 & 10

Guy C Cox, 1998 The Power of Two. Today's Life Science 10 (3) 36-38

Guy C Cox, 2002 Biological confocal microscopy. Materials Today March 2002, 34-41

Guy Cox, 2003 Circumcision for phimosis and other medical indications in Western Australian boys. Medical Journal of Australia 178, 588   PDF

Cox G, 2004 Spare parts (letter) New Scientist 182 (2444): 73-73 Apr 24 2004

Cox G, 2004 Sex and selection (letter) New Scientist 181 (2432): 38-38 Jan-Feb 2004

Cox G, 2004 Let's be hermaphrodite (letter) New Scientist 181 (2429): 30-30 Jan 10 2004

Guy Cox, 2006 Circumcision sparks a spirited debate (letter) Sunday Telegraph May 7th, p90

Cox G, 2006 A kinder cut (letter) New Scientist 192 (2582): 21 Dec 16 2006

Cox, Guy. 2007 Editorial, Special issue on Super-resolution and other Novel Microscopies. Micron 38, 95

Cox G, 2007 Life expectancies (letter) New Scientist 196 (2629): 27 10 Nov 2007

Cox G, 2008 Reinventing Helen (letter) Good Weekend (Sydney Morning Herald) 31st May 2008, p6

Guy Cox, 2008. Medical Evidence. the Skeptic, Winter 2008, 58-59

Guy Cox & David Cockayne, 2008. 16 – Organising microscopy conferences. In: K Ratinac (ed) 50 Great Moments. Sydney University Press, 129-132

Guy Cox, 2008. 17 – Cryogenic Specimen Preparation In: K Ratinac (ed) 50 Great Moments. Sydney University Press, 133-136

Guy Cox & Allan Jones, 2008. 20 – Image Analysis In: K Ratinac (ed) 50 Great Moments. Sydney University Press, 147-152

Guy Cox, 2008. 22 – The Australian EM Newsletter. In: K Ratinac (ed) 50 Great Moments. Sydney University Press, 159-162

Maret Vesk & Guy Cox, 2008. 23 – International Workshops – the EMU goes global. In: K Ratinac (ed) 50 Great Moments. Sydney University Press, 163-170

Guy Cox, 2008. 27 – Optical Microscopy. In: K Ratinac (ed) 50 Great Moments. Sydney University Press, 191-196

Guy Cox, 2008. The early days of the Australian EM Newsletter. Aust. EM Newsletter 100, 28-31

Guy Cox, 2009 Heating up (letter). New Scientist 201 (2701) 24 28th March 2009

Guy Cox, 2009. The kindest cuts (Letter) Parting Shot, The Land, July 23rd 2009 p 15